Add docker-compose.sboldb.yml to run SynBioHub on sbol-db - #24
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A drop-in alternative to docker-compose.yml that replaces the Virtuoso service with sbol-db (backed by Postgres). sbol-db answers on the virtuoso network alias at port 8890 and exposes the same HTTP SPARQL endpoints (/sparql, /sparql-auth, /sparql-graph-crud-auth/), so SynBioHub's triplestore configuration is unchanged and the triplestore is selected purely by which compose file docker-compose is given.
cjmyers
approved these changes
Jul 15, 2026
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A drop-in alternative to docker-compose.yml that replaces the Virtuoso service with sbol-db (backed by Postgres). sbol-db answers on the virtuoso network alias at port 8890 and exposes the same HTTP SPARQL endpoints (
/sparql,/sparql-auth,/sparql-graph-crud-auth/), so SynBioHub's triplestore configuration is unchanged and the triplestore is selected purely by which compose file docker-compose is given.After this merges to master, we need to make sure to also update the
snapshot branch(that's the branchtests/start_containers.shclones). This blocks merging SynBioHub/synbiohub#1743.